Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs34909049 chr11:48022512 C/T 3.66E-7 494 31.67 32.77 33.7 KM Plot
THCA rs34933869 chr2:86922397 T/C 3.6E-9 499 32.15 27.77 14.73 KM Plot
THCA rs34988194 chr2:87022635 G/A 5.89E-8 503 32.77 28.23 32.1 KM Plot
THCA rs35036485 chr1:152983644 A/G 0.000141 500 31.6 32.37 37.7 KM Plot
THCA rs35043135 chr10:110960795 G/C 0.000133 502 31.47 32.13 32.1 KM Plot
THCA rs35051935 chr7:32771340 G/A 0.000105 495 31.45 32.9 31.97 KM Plot
THCA rs35080956 chr11:123527665 C/T 1.72E-5 499 31.78 28.33 30.42 KM Plot
THCA rs35113160 chr19:5972080 A/G 8.07E-5 496 31.5 33.43 20.2 KM Plot
THCA rs35117634 chr7:43947774 G/A 1.56E-9 502 31.15 33.5 31.03 KM Plot
THCA rs35129240 chr2:86929217 G/A 3.32E-9 499 32.27 27.7 14.73 KM Plot
THCA rs35159404 chr10:104805610 C/A 7.98E-14 501 31.27 35.33 32.1 KM Plot
THCA rs35185367 chr7:43938757 TA/T 2.88E-9 501 31.03 33.52 30.83 KM Plot
THCA rs35203905 chr19:49571552 C/T 6.36E-7 496 31.47 33.22 20.77 KM Plot
THCA rs35230993 chr1:3709110 T/G 7.91E-5 495 31.67 32.9 19.73 KM Plot
THCA rs35290870 chr2:87023103 G/C 5.89E-8 503 32.77 28.23 32.1 KM Plot